PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08281
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 268aa    MW: 30431.7 Da    PI: 8.2473
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08281genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06129149626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C  f+ +  C+yGd+C+F+H+
  PEQU_08281 129 CWKFYNGEMCPYGDKCSFSHV 149
                 556666448***********5 PP

2zf-CCCH406.6e-13167192126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ ++ +G C+yGd+C++aHg
  PEQU_08281 167 WKTKICHKWLTSGNCPYGDQCSYAHG 192
                 8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-135287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-85486IPR000571Zinc finger, CCCH-type
SMARTSM003560.0075581IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9065582IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-7122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6123148IPR000571Zinc finger, CCCH-type
SMARTSM003560.083125150IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6166193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-10166197IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10167192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901167194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-15167198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDRPFGLPRP MESSITHEQG IPAEFVGHYL QIPPIFPNPM SNPMCDFPGK PQSVYFKTRM  60
CVRFTSGCCP KGSNCNFAHS IEELRRPVGN VDKRASFLQK DRSSRNESNI IIPVFDPREE  120
QKLSKNKICW KFYNGEMCPY GDKCSFSHVG PGSLQDNPLF NQKSLCWKTK ICHKWLTSGN  180
CPYGDQCSYA HGDAELRKLA GDNNIELVEK NVLEAPPKCT SHLSDDILSK TMKEPEDRRE  240
IPASQPKVRA LSLRKISRIY GDWIDDTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-29C3H family protein